IQ-TREE multicore version 1.6.12 for Linux 64-bit built Aug 15 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    rabi (SSE4.2, 15 GB RAM)
Command: ../../iqtree -s Pettalidae_28S_mafft_gblocks.fasta -m TESTNEW -bb 1000 -alrt 1000
Seed:    280431 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Jun 15 23:13:09 2022
Kernel:  SSE2 - 1 threads (24 CPU cores detected)

HINT: Use -nt option to specify number of threads because your CPU has 24 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.

Reading alignment file Pettalidae_28S_mafft_gblocks.fasta ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
Alignment has 122 sequences with 2076 columns, 553 distinct patterns
266 parsimony-informative, 255 singleton sites, 1555 constant sites
                                             Gap/Ambiguity  Composition  p-value
   1  Limulus_polyphemus                             1.78%    passed     61.71%
   2  Metasiro_savannahensis_MCZ-134557              1.20%    passed     94.03%
   3  Cyphophthalmus_duricorius_MCZ-135009          39.16%    passed     46.32%
   4  Paramiopsalis_ramulosus_MCZ-135006             0.96%    passed     97.14%
   5  Parasiro_coiffaiti_MCZ-132372                  0.77%    passed     88.55%
   6  Parasiro_minor_MCZ-132374                      0.72%    passed     96.68%
   7  Siro_exilis_MCZ-134551                         4.00%    passed     94.64%
   8  Siro_rubens_MCZ-132391                         0.87%    passed     79.10%
   9  Suzukielus_sauteri_MCZ-132256                  0.92%    passed     89.01%
  10  Archaeopurcellia_eureka_MCZ-162249             2.31%    passed     94.47%
  11  Aoraki_westlandica_MCZ-134653                  0.24%    passed     99.36%
  12  Aoraki_crypta_MCZ-101289                       0.00%    passed     99.91%
  13  Aoraki_denticulata_denticulata_MCZ-134642      1.59%    passed     98.91%
  14  Aoraki_denticulata_denticulata_MCZ-134646      0.00%    passed     99.96%
  15  Aoraki_denticulata_denticulata_MCZ-134639_1    0.00%    passed     99.82%
  16  Aoraki_denticulata_denticulata_MCZ-134659_1    0.00%    passed     99.96%
  17  Aoraki_denticulata_major_MCZ-134644            0.00%    passed     99.96%
  18  Aoraki_denticulata_major_MCZ-35669            38.92%    passed     28.83%
  19  Aoraki_grandis_MCZ-134652                      0.00%    passed     99.82%
  20  Aoraki_granulosa_MCZ-134675                    0.00%    passed     99.89%
  21  Aoraki_granulosa_MCZ-134684                    0.00%    passed     99.89%
  22  Aoraki_healyi_MCZ-134638                       0.00%    passed     99.87%
  23  Aoraki_inerma_MCZ-134648                       0.00%    passed     99.81%
  24  Aoraki_longitarsa_MCZ-134656_1                 0.00%    passed     99.96%
  25  Aoraki_longitarsa_MCZ-134656_2                 0.00%    passed     99.96%
  26  Aoraki_longitarsa_MCZ-35659                    0.05%    passed     99.96%
  27  Aoraki_longitarsa_MCZ-35660                    0.05%    passed     99.96%
  28  Aoraki_longitarsa_CMNZ                         0.00%    passed     99.97%
  29  Aoraki_tumidata_MCZ-133838                    27.41%    passed     92.36%
  30  Austropurcellia_acuta_MCZ-134701               0.00%    passed     99.87%
  31  Austropurcellia_arcticosa_MCZ-132325           5.44%    passed     99.85%
  32  Austropurcellia_cadens_CASENT9035046           0.05%    passed     99.95%
  33  Austropurcellia_clousei_MCZ-132339             1.35%    passed     98.63%
  34  Austropurcellia_culminis_MCZ-132322            0.00%    passed     99.92%
  35  Austropurcellia_daviesae_MCZ-132323            0.00%    passed     99.97%
  36  Austropurcellia_despectata_MCZ-132324          0.00%    passed     99.88%
  37  Austropurcellia_giribeti_MCZ-132337            5.06%    passed     99.97%
  38  Austropurcellia_giribeti_MCZ-134696            0.00%    passed     99.73%
  39  Austropurcellia_scoparia_MCZ-134700            0.00%    passed     99.97%
  40  Austropurcellia_sharmai_MCZ-134698             0.00%    passed     99.75%
  41  Austropurcellia_tholei_MCZ-134697              0.00%    passed     99.99%
  42  Austropurcellia_vicina_MCZ-132318              0.00%    passed     99.64%
  43  Austropurcellia_vicina_MCZ-132334              1.97%    passed     98.77%
  44  Chileogovea_jocasta_MCZ-134713                 0.05%    passed     99.84%
  45  Chileogovea_jocasta_MCZ-134714                 0.05%    passed     99.84%
  46  Chileogovea_jocasta_MCZ-134715                 0.05%    passed     99.84%
  47  Chileogovea_oedipus_MCZ-134709                 0.05%    passed     99.31%
  48  Chileogovea_oedipus_MCZ-134710                 0.05%    passed     98.83%
  49  Chileogovea_oedipus_MCZ-134711                11.27%    passed     67.54%
  50  Chileogovea_oedipus_MCZ-134712                 0.05%    passed     97.12%
  51  Karripurcellia_harveyi_MCZ-132345              0.00%    passed     99.84%
  52  Karripurcellia_peckorum_MCZ-134719             0.00%    passed     99.84%
  53  Karripurcellia_peckorum_MCZ-134720             0.00%    passed     99.84%
  54  Karripurcellia_peckorum_MCZ-134721             0.00%    passed     99.84%
  55  Karripurcellia_peckorum_MCZ-134725             0.00%    passed     99.84%
  56  Karripurcellia_peckorum_MCZ-134726             0.00%    passed     99.63%
  57  Neopurcellia_salmoni_MCZ-29317                 0.05%    passed     99.94%
  58  Neopurcellia_salmoni_MCZ-133839                0.05%    passed     99.96%
  59  Neopurcellia_salmoni_MCZ-134739               46.29%    passed     56.63%
  60  Neopurcellia_salmoni_MCZ-134741                0.05%    passed     99.96%
  61  Parapurcellia_amatola_MCZ-133841               0.00%    passed     99.31%
  62  Parapurcellia_convexa_MCZ-134744               0.00%    passed     99.69%
  63  Parapurcellia_convexa_MCZ-128902               0.00%    passed     99.95%
  64  Parapurcellia_fissa_MCZ-134745                 0.00%    passed     99.87%
  65  Parapurcellia_minuta_MCZ-134747                0.00%    passed     99.17%
  66  Parapurcellia_monticola_MCZ-60357_1            0.00%    passed     98.18%
  67  Parapurcellia_monticola_MCZ-60357_2            0.00%    passed     98.18%
  68  Parapurcellia_monticola_MCZ-134751             0.00%    passed     98.18%
  69  Parapurcellia_peregrinator_MCZ-128901          0.00%    passed     99.65%
  70  Parapurcellia_rumpiana_MCZ-134748              0.10%    passed     97.84%
  71  Parapurcellia_silvicola_MCZ-134742_1           0.05%    passed     99.82%
  72  Parapurcellia_silvicola_MCZ-134742_2           0.05%    passed     99.82%
  73  Parapurcellia_staregai_MCZ-134746              0.00%    passed     99.72%
  74  Parapurcellia_nsp_Limpopo_MCZ-128900           0.00%    passed     99.95%
  75  Pettalus_thwaitesi_DNA101223                   0.05%    passed     96.16%
  76  Pettalus_sp_MCZ-132353                         0.00%    passed     96.00%
  77  Pettalus_sp_MCZ-132354                         0.00%    passed     98.66%
  78  Pettalus_sp_MCZ-132356                         0.29%    passed     96.65%
  79  Pettalus_sp_MCZ-132357                         0.00%    passed     96.73%
  80  Pettalus_sp_MCZ-132359                         0.00%    passed     98.66%
  81  Pettalus_sp_MCZ-132360                         0.00%    passed     92.10%
  82  Pettalus_sp_MCZ-134967                        29.67%    passed     97.23%
  83  Purcellia_argasiformis_MCZ-134759              0.00%    passed     99.36%
  84  Purcellia_argasiformis_MCZ-134762              0.00%    passed     99.30%
  85  Purcellia_griswoldi_MCZ-128898                 0.00%    passed     99.73%
  86  Purcellia_griswoldi_MCZ-134756                 0.00%    passed     99.73%
  87  Purcellia_illustrans_MCZ-60635                 0.00%    passed     99.62%
  88  Purcellia_illustrans_MCZ-128896                0.00%    passed     99.62%
  89  Purcellia_illustrans_MCZ-134753                7.08%    passed     92.07%
  90  Purcellia_illustrans_MCZ-134754                0.00%    passed     99.62%
  91  Purcellia_leleupi_MCZ-129098                   0.00%    passed     99.81%
  92  Purcellia_sp_MCZ-128897                        0.00%    passed     99.67%
  93  Purcellia_sp_MCZ-129493                        0.05%    passed     99.72%
  94  Purcellia_sp_MCZ-129494                        0.10%    passed     99.42%
  95  Rakaia_antipodiana_MCZ-134580                  0.05%    passed     99.69%
  96  Rakaia_australis_MCZ-134592                    1.97%    passed     99.72%
  97  Rakaia_collaris_MCZ-134574                     0.00%    passed     99.90%
  98  Rakaia_digitata_MCZ-134571                     0.00%    passed     99.63%
  99  Rakaia_dorothea_MCZ-134577                     0.00%    passed     99.99%
 100  Rakaia_florensis_MCZ-134588                    0.00%    passed     99.87%
 101  Rakaia_lindsayi_MCZ-134598                     0.00%    passed     99.99%
 102  Rakaia_macra_MCZ-134582                        1.49%    passed     99.59%
 103  Rakaia_media_MCZ-134581                        0.00%    passed     99.45%
 104  Rakaia_media_MCZ-134605                        4.38%    passed     95.85%
 105  Rakaia_minutissima_MCZ-29280                   0.00%    passed     99.04%
 106  Rakaia_minutissima_MCZ-134591                  0.00%    passed     99.78%
 107  Rakaia_pauli_MCZ-134576                        0.05%    passed     99.71%
 108  Rakaia_solitaria_MCZ-134585                    0.00%    passed     99.79%
 109  Rakaia_sorenseni_MCZ-134567                    0.00%    passed     99.98%
 110  Rakaia_stewartiensis_MCZ-134599                0.00%    passed     99.79%
 111  Rakaia_uniloca_MCZ-134583                      0.24%    passed     99.96%
 112  Rakaia_uniloca_MCZ-134600                      0.00%    passed     99.97%
 113  Rakaia_sp_MCZ-35662                            0.00%    passed     99.63%
 114  Rakaia_sp_MCZ-35668                            0.14%    passed     99.74%
 115  Rakaia_sp_MCZ-100753                           0.00%    passed     99.62%
 116  Rakaia_sp_MCZ-129612                           0.00%    passed     99.99%
 117  Rakaia_sp_MCZ-129614                           0.00%    passed     99.97%
 118  Rakaia_sp_MCZ-133847                           0.00%    passed     99.99%
 119  Rakaia_sp_MCZ-133849                           0.00%    passed     99.39%
 120  Rakaia_sp_MCZ-134568                          39.21%    passed     79.32%
 121  Rakaia_sp_MCZ-134575                           0.00%    passed     99.90%
 122  Rakaia_sp_MCZ-134584                           0.00%    passed     99.99%
****  TOTAL                                          2.28%  0 sequences failed composition chi2 test (p-value<5%; df=3)
NOTE: Aoraki_denticulata_denticulata_MCZ-134659_1 is identical to Aoraki_denticulata_denticulata_MCZ-134646 but kept for subsequent analysis
NOTE: Aoraki_granulosa_MCZ-134684 is identical to Aoraki_granulosa_MCZ-134675 but kept for subsequent analysis
NOTE: Aoraki_longitarsa_MCZ-134656_2 is identical to Aoraki_longitarsa_MCZ-134656_1 but kept for subsequent analysis
NOTE: Aoraki_longitarsa_MCZ-35660 is identical to Aoraki_longitarsa_MCZ-35659 but kept for subsequent analysis
NOTE: Chileogovea_jocasta_MCZ-134714 is identical to Chileogovea_jocasta_MCZ-134713 but kept for subsequent analysis
NOTE: Karripurcellia_peckorum_MCZ-134719 is identical to Karripurcellia_harveyi_MCZ-132345 but kept for subsequent analysis
NOTE: Neopurcellia_salmoni_MCZ-134741 is identical to Neopurcellia_salmoni_MCZ-133839 but kept for subsequent analysis
NOTE: Parapurcellia_monticola_MCZ-60357_2 is identical to Parapurcellia_monticola_MCZ-60357_1 but kept for subsequent analysis
NOTE: Parapurcellia_silvicola_MCZ-134742_2 is identical to Parapurcellia_silvicola_MCZ-134742_1 but kept for subsequent analysis
NOTE: Pettalus_sp_MCZ-132359 is identical to Pettalus_sp_MCZ-132354 but kept for subsequent analysis
NOTE: Purcellia_griswoldi_MCZ-134756 is identical to Purcellia_griswoldi_MCZ-128898 but kept for subsequent analysis
NOTE: Purcellia_illustrans_MCZ-128896 is identical to Purcellia_illustrans_MCZ-60635 but kept for subsequent analysis
NOTE: Rakaia_sp_MCZ-35662 is identical to Rakaia_digitata_MCZ-134571 but kept for subsequent analysis
NOTE: Rakaia_sp_MCZ-129612 is identical to Rakaia_dorothea_MCZ-134577 but kept for subsequent analysis
NOTE: 8 identical sequences (see below) will be ignored for subsequent analysis
NOTE: Aoraki_denticulata_major_MCZ-134644 (identical to Aoraki_denticulata_denticulata_MCZ-134646) is ignored but added at the end
NOTE: Chileogovea_jocasta_MCZ-134715 (identical to Chileogovea_jocasta_MCZ-134713) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134720 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134721 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134725 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Parapurcellia_monticola_MCZ-134751 (identical to Parapurcellia_monticola_MCZ-60357_1) is ignored but added at the end
NOTE: Purcellia_illustrans_MCZ-134754 (identical to Purcellia_illustrans_MCZ-60635) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-134584 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end

For your convenience alignment with unique sequences printed to Pettalidae_28S_mafft_gblocks.fasta.uniqueseq.phy


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.022 seconds
NOTE: ModelFinder requires 22 MB RAM!
ModelFinder will test 286 DNA models (sample size: 2076) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  JC            10247.839    225 20945.678    21000.651    22214.272
  2  JC+I          9650.477     226 19752.954    19808.446    21027.187
  3  JC+G4         9595.484     226 19642.967    19698.459    20917.200
  4  JC+I+G4       9514.783     227 19483.565    19539.578    20763.436
  5  JC+R2         9523.146     227 19500.292    19556.305    20780.163
  6  JC+R3         9485.574     229 19429.149    19486.213    20720.296
  7  JC+R4         9471.927     231 19405.854    19463.980    20708.278
  8  JC+R5         9457.903     233 19381.806    19441.005    20695.507
  9  JC+R6         9453.244     235 19376.487    19436.770    20701.464
 14  F81+F         10271.913    228 20999.826    21056.363    22285.335
 15  F81+F+I       9678.345     229 19814.689    19871.753    21105.837
 16  F81+F+G4      9624.479     229 19706.959    19764.023    20998.106
 17  F81+F+I+G4    9546.462     230 19552.925    19610.518    20849.710
 18  F81+F+R2      9556.076     230 19572.152    19629.746    20868.938
 19  F81+F+R3      9519.293     232 19502.585    19561.246    20810.647
 20  F81+F+R4      9505.841     234 19479.681    19539.421    20799.020
 21  F81+F+R5      9491.916     236 19455.832    19516.661    20786.447
 22  F81+F+R6      9487.222     238 19450.444    19512.373    20792.335
 27  K2P           10121.296    226 20694.591    20750.083    21968.824
 28  K2P+I         9515.530     227 19485.060    19541.073    20764.931
 29  K2P+G4        9456.604     227 19367.207    19423.220    20647.078
 30  K2P+I+G4      9373.451     228 19202.902    19259.439    20488.411
 31  K2P+R2        9385.267     228 19226.535    19283.072    20512.044
 32  K2P+R3        9346.191     230 19152.381    19209.975    20449.167
 33  K2P+R4        9331.550     232 19127.100    19185.761    20435.162
 34  K2P+R5        9316.294     234 19100.587    19160.327    20419.926
 35  K2P+R6        9311.026     236 19094.051    19154.880    20424.666
 40  HKY+F         10137.719    229 20733.438    20790.502    22024.586
 41  HKY+F+I       9520.971     230 19501.942    19559.536    20798.728
 42  HKY+F+G4      9464.254     230 19388.507    19446.101    20685.293
 43  HKY+F+I+G4    9384.582     231 19231.163    19289.289    20533.587
 44  HKY+F+R2      9402.978     231 19267.956    19326.082    20570.380
 45  HKY+F+R3      9364.355     233 19194.710    19253.909    20508.410
 46  HKY+F+R4      9349.469     235 19168.938    19229.221    20493.914
 47  HKY+F+R5      9332.764     237 19139.527    19200.905    20475.780
 48  HKY+F+R6      9326.853     239 19131.706    19194.189    20479.235
 53  TNe           10042.496    227 20538.992    20595.005    21818.863
 54  TNe+I         9481.049     228 19418.097    19474.635    20703.607
 55  TNe+G4        9402.003     228 19260.007    19316.544    20545.516
 56  TNe+I+G4      9327.896     229 19113.791    19170.855    20404.939
 57  TNe+R2        9331.327     229 19120.653    19177.717    20411.800
 58  TNe+R3        9291.859     231 19045.717    19103.843    20348.141
 59  TNe+R4        9277.400     233 19020.800    19079.999    20334.501
 60  TNe+R5        9263.081     235 18996.161    19056.444    20321.138
 61  TNe+R6        9258.655     237 18991.311    19052.688    20327.564
 66  TN+F          10033.667    230 20527.334    20584.928    21824.120
 67  TN+F+I        9470.794     231 19403.587    19461.713    20706.011
 68  TN+F+G4       9388.790     231 19239.581    19297.707    20542.005
 69  TN+F+I+G4     9318.391     232 19100.783    19159.444    20408.845
 70  TN+F+R2       9327.896     232 19119.792    19178.453    20427.854
 71  TN+F+R3       9288.037     234 19044.073    19103.812    20363.412
 72  TN+F+R4       9273.646     236 19019.292    19080.121    20349.907
 73  TN+F+R5       9259.366     238 18994.732    19056.661    20336.623
 74  TN+F+R6       9254.862     240 18989.724    19052.765    20342.892
 79  K3P           10123.474    227 20700.947    20756.960    21980.818
 80  K3P+I         9516.389     228 19488.779    19545.316    20774.288
 81  K3P+G4        9457.056     228 19370.112    19426.649    20655.621
 82  K3P+I+G4      9373.303     229 19204.607    19261.670    20495.754
 83  K3P+R2        9385.384     229 19228.768    19285.831    20519.915
 84  K3P+R3        9345.981     231 19153.963    19212.088    20456.386
 85  K3P+R4        9330.850     233 19127.701    19186.899    20441.401
 86  K3P+R5        9315.343     235 19100.687    19160.969    20425.663
 87  K3P+R6        9310.030     237 19094.061    19155.438    20430.314
 92  K3Pu+F        10138.810    230 20737.620    20795.214    22034.406
 93  K3Pu+F+I      9520.123     231 19502.246    19560.372    20804.670
 94  K3Pu+F+G4     9462.855     231 19387.710    19445.836    20690.134
 95  K3Pu+F+I+G4   9382.823     232 19229.645    19288.306    20537.707
 96  K3Pu+F+R2     9401.757     232 19267.514    19326.174    20575.576
 97  K3Pu+F+R3     9362.792     234 19193.584    19253.323    20512.922
 98  K3Pu+F+R4     9347.531     236 19167.062    19227.891    20497.677
 99  K3Pu+F+R5     9331.189     238 19138.378    19200.308    20480.270
100  K3Pu+F+R6     9325.210     240 19130.420    19193.461    20483.588
105  TPM2+F        10124.073    230 20708.145    20765.739    22004.931
106  TPM2+F+I      9496.087     231 19454.174    19512.300    20756.598
107  TPM2+F+G4     9437.892     231 19337.783    19395.909    20640.207
108  TPM2+F+I+G4   9361.339     232 19186.679    19245.340    20494.741
109  TPM2+F+R2     9385.448     232 19234.896    19293.557    20542.958
110  TPM2+F+R3     9346.948     234 19161.896    19221.636    20481.235
111  TPM2+F+R4     9331.517     236 19135.034    19195.863    20465.649
112  TPM2+F+R5     9314.497     238 19104.995    19166.924    20446.886
113  TPM2+F+R6     9308.056     240 19096.113    19159.154    20449.280
118  TPM2u+F       10124.082    230 20708.165    20765.758    22004.950
119  TPM2u+F+I     9496.093     231 19454.187    19512.313    20756.611
120  TPM2u+F+G4    9437.899     231 19337.797    19395.923    20640.221
121  TPM2u+F+I+G4  9361.323     232 19186.645    19245.306    20494.707
122  TPM2u+F+R2    9385.454     232 19234.908    19293.569    20542.970
123  TPM2u+F+R3    9346.951     234 19161.902    19221.641    20481.240
124  TPM2u+F+R4    9331.511     236 19135.022    19195.851    20465.637
125  TPM2u+F+R5    9314.482     238 19104.965    19166.894    20446.856
126  TPM2u+F+R6    9307.998     240 19095.995    19159.036    20449.163
131  TPM3+F        10112.115    230 20684.230    20741.824    21981.016
132  TPM3+F+I      9486.246     231 19434.492    19492.618    20736.916
133  TPM3+F+G4     9427.525     231 19317.050    19375.176    20619.474
134  TPM3+F+I+G4   9352.679     232 19169.358    19228.019    20477.420
135  TPM3+F+R2     9377.128     232 19218.255    19276.916    20526.317
136  TPM3+F+R3     9338.542     234 19145.084    19204.823    20464.422
137  TPM3+F+R4     9323.290     236 19118.579    19179.408    20449.194
138  TPM3+F+R5     9306.705     238 19089.411    19151.340    20431.302
139  TPM3+F+R6     9300.355     240 19080.710    19143.750    20433.877
144  TPM3u+F       10112.118    230 20684.235    20741.829    21981.021
145  TPM3u+F+I     9486.249     231 19434.498    19492.624    20736.922
146  TPM3u+F+G4    9427.527     231 19317.054    19375.180    20619.478
147  TPM3u+F+I+G4  9352.673     232 19169.346    19228.007    20477.408
148  TPM3u+F+R2    9377.131     232 19218.262    19276.922    20526.324
149  TPM3u+F+R3    9338.544     234 19145.088    19204.828    20464.427
150  TPM3u+F+R4    9323.284     236 19118.569    19179.397    20449.183
151  TPM3u+F+R5    9306.692     238 19089.384    19151.314    20431.276
152  TPM3u+F+R6    9300.343     240 19080.685    19143.726    20433.853
157  TIMe          10042.439    228 20540.878    20597.415    21826.387
158  TIMe+I        9480.961     229 19419.922    19476.986    20711.069
159  TIMe+G4       9401.877     229 19261.754    19318.818    20552.901
160  TIMe+I+G4     9327.887     230 19115.775    19173.368    20412.560
161  TIMe+R2       9331.133     230 19122.265    19179.859    20419.051
162  TIMe+R3       9291.645     232 19047.290    19105.950    20355.352
163  TIMe+R4       9276.994     234 19021.988    19081.727    20341.326
164  TIMe+R5       9262.604     236 18997.208    19058.037    20327.823
165  TIMe+R6       9258.105     238 18992.210    19054.139    20334.101
170  TIM+F         10032.863    231 20527.725    20585.851    21830.149
171  TIM+F+I       9469.450     232 19402.900    19461.561    20710.962
172  TIM+F+G4      9387.404     232 19238.808    19297.469    20546.870
173  TIM+F+I+G4    9317.143     233 19100.285    19159.484    20413.986
174  TIM+F+R2      9326.743     233 19119.486    19178.684    20433.186
175  TIM+F+R3      9286.867     235 19043.735    19104.018    20368.712
176  TIM+F+R4      9272.338     237 19018.677    19080.054    20354.930
177  TIM+F+R5      9257.986     239 18993.972    19056.455    20341.501
178  TIM+F+R6      9253.403     241 18988.807    19052.408    20347.613
183  TIM2e         10037.788    228 20531.576    20588.113    21817.085
184  TIM2e+I       9473.600     229 19405.201    19462.264    20696.348
185  TIM2e+G4      9393.225     229 19244.449    19301.513    20535.597
186  TIM2e+I+G4    9321.408     230 19102.815    19160.409    20399.601
187  TIM2e+R2      9326.712     230 19113.424    19171.017    20410.209
188  TIM2e+R3      9287.809     232 19039.618    19098.279    20347.680
189  TIM2e+R4      9273.369     234 19014.738    19074.478    20334.077
190  TIM2e+R5      9259.123     236 18990.247    19051.076    20320.862
191  TIM2e+R6      9254.616     238 18985.231    19047.160    20327.122
196  TIM2+F        10018.558    231 20499.116    20557.242    21801.540
197  TIM2+F+I      9445.666     232 19355.332    19413.993    20663.394
198  TIM2+F+G4     9361.625     232 19187.250    19245.911    20495.312
199  TIM2+F+I+G4   9294.443     233 19054.886    19114.084    20368.586
200  TIM2+F+R2     9309.019     233 19084.038    19143.236    20397.738
201  TIM2+F+R3     9270.002     235 19010.005    19070.288    20334.982
202  TIM2+F+R4     9255.638     237 18985.276    19046.654    20321.529
203  TIM2+F+R5     9241.238     239 18960.476    19022.960    20308.006
204  TIM2+F+R6     9236.457     241 18954.914    19018.515    20313.720
209  TIM3e         10027.990    228 20511.980    20568.517    21797.489
210  TIM3e+I       9460.186     229 19378.371    19435.435    20669.519
211  TIM3e+G4      9387.949     229 19233.899    19290.962    20525.046
212  TIM3e+I+G4    9315.029     230 19090.057    19147.651    20386.843
213  TIM3e+R2      9321.105     230 19102.209    19159.803    20398.995
214  TIM3e+R3      9282.217     232 19028.434    19087.095    20336.496
215  TIM3e+R4      9267.803     234 19003.607    19063.346    20322.945
216  TIM3e+R5      9253.541     236 18979.081    19039.910    20309.696
217  TIM3e+R6      9248.983     238 18973.967    19035.896    20315.858
222  TIM3+F        10005.345    231 20472.689    20530.815    21775.113
223  TIM3+F+I      9435.896     232 19335.792    19394.453    20643.854
224  TIM3+F+G4     9355.637     232 19175.273    19233.934    20483.335
225  TIM3+F+I+G4   9288.390     233 19042.780    19101.979    20356.481
226  TIM3+F+R2     9303.726     233 19073.452    19132.651    20387.152
227  TIM3+F+R3     9264.174     235 18998.347    19058.630    20323.324
228  TIM3+F+R4     9249.992     237 18973.984    19035.362    20310.237
229  TIM3+F+R5     9235.859     239 18949.718    19012.202    20297.247
230  TIM3+F+R6     9231.155     241 18944.311    19007.912    20303.117
235  TVMe          10104.382    229 20666.765    20723.829    21957.912
236  TVMe+I        9486.923     230 19433.845    19491.439    20730.631
237  TVMe+G4       9432.320     230 19324.640    19382.233    20621.425
238  TVMe+I+G4     9353.489     231 19168.979    19227.104    20471.402
239  TVMe+R2       9370.003     231 19202.006    19260.131    20504.429
240  TVMe+R3       9331.689     233 19129.379    19188.577    20443.079
241  TVMe+R4       9316.690     235 19103.380    19163.662    20428.356
242  TVMe+R5       9300.781     237 19075.562    19136.940    20411.815
243  TVMe+R6       9295.012     239 19068.023    19130.507    20415.553
248  TVM+F         10096.559    232 20657.119    20715.780    21965.181
249  TVM+F+I       9460.623     233 19387.247    19446.446    20700.947
250  TVM+F+G4      9401.084     233 19268.168    19327.367    20581.869
251  TVM+F+I+G4    9329.664     234 19127.327    19187.066    20446.666
252  TVM+F+R2      9359.388     234 19186.775    19246.515    20506.114
253  TVM+F+R3      9321.091     236 19114.182    19175.011    20444.797
254  TVM+F+R4      9306.042     238 19088.085    19150.014    20429.976
255  TVM+F+R5      9288.273     240 19056.547    19119.588    20409.714
256  TVM+F+R6      9281.506     242 19047.012    19111.175    20411.456
261  SYM           10023.048    230 20506.096    20563.689    21802.881
262  SYM+I         9452.187     231 19366.374    19424.500    20668.798
263  SYM+G4        9379.143     231 19220.286    19278.412    20522.710
264  SYM+I+G4      9308.453     232 19080.906    19139.567    20388.968
265  SYM+R2        9316.361     232 19096.723    19155.384    20404.785
266  SYM+R3        9278.044     234 19024.088    19083.827    20343.426
267  SYM+R4        9263.908     236 18999.815    19060.644    20330.430
268  SYM+R5        9249.656     238 18975.312    19037.241    20317.203
269  SYM+R6        9245.065     240 18970.130    19033.171    20323.297
274  GTR+F         9990.187     233 20446.373    20505.572    21760.073
275  GTR+F+I       9410.604     234 19289.207    19348.947    20608.546
276  GTR+F+G4      9328.904     234 19125.808    19185.547    20445.146
277  GTR+F+I+G4    9264.573     235 18999.147    19059.429    20324.123
278  GTR+F+R2      9284.740     235 19039.480    19099.762    20364.456
279  GTR+F+R3      9246.040     237 18966.081    19027.458    20302.334
280  GTR+F+R4      9232.649     239 18943.297    19005.781    20290.827
281  GTR+F+R5      9217.824     241 18917.648    18981.249    20276.453
282  GTR+F+R6      9212.869     243 18911.739    18976.468    20281.821
Akaike Information Criterion:           GTR+F+R6
Corrected Akaike Information Criterion: GTR+F+R6
Bayesian Information Criterion:         GTR+F+R5
Best-fit model: GTR+F+R5 chosen according to BIC

All model information printed to Pettalidae_28S_mafft_gblocks.fasta.model.gz
CPU time for ModelFinder: 135.077 seconds (0h:2m:15s)
Wall-clock time for ModelFinder: 135.459 seconds (0h:2m:15s)
Generating 1000 samples for ultrafast bootstrap (seed: 280431)...

NOTE: 12 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -9921.762
2. Current log-likelihood: -9358.799
3. Current log-likelihood: -9267.152
4. Current log-likelihood: -9262.150
5. Current log-likelihood: -9256.828
6. Current log-likelihood: -9249.510
7. Current log-likelihood: -9242.295
8. Current log-likelihood: -9236.997
9. Current log-likelihood: -9233.296
10. Current log-likelihood: -9230.539
11. Current log-likelihood: -9228.444
12. Current log-likelihood: -9226.628
13. Current log-likelihood: -9225.068
14. Current log-likelihood: -9223.779
15. Current log-likelihood: -9222.776
16. Current log-likelihood: -9222.085
17. Current log-likelihood: -9221.550
18. Current log-likelihood: -9221.128
19. Current log-likelihood: -9220.787
20. Current log-likelihood: -9220.503
21. Current log-likelihood: -9220.262
22. Current log-likelihood: -9220.056
23. Current log-likelihood: -9219.878
24. Current log-likelihood: -9219.721
25. Current log-likelihood: -9219.584
26. Current log-likelihood: -9219.462
27. Current log-likelihood: -9219.355
Optimal log-likelihood: -9219.256
Rate parameters:  A-C: 0.85280  A-G: 1.32440  A-T: 1.84502  C-G: 0.41093  C-T: 4.85575  G-T: 1.00000
Base frequencies:  A: 0.209  C: 0.267  G: 0.333  T: 0.190
Site proportion and rates:  (0.819,0.179) (0.021,0.601) (0.031,3.260) (0.095,3.345) (0.033,12.755)
Parameters optimization took 27 rounds (14.176 sec)
Computing ML distances based on estimated model parameters... 0.138 sec
Computing BIONJ tree...
0.045 seconds
Log-likelihood of BIONJ tree: -9258.680
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 98 parsimony trees... 1.577 second
Computing log-likelihood of 98 initial trees ... 6.688 seconds
Current best score: -9190.253

Do NNI search on 20 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -9181.317
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 2: -9180.350
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 3: -9174.504
Iteration 10 / LogL: -9174.676 / Time: 0h:0m:35s
Iteration 20 / LogL: -9180.309 / Time: 0h:0m:44s
Finish initializing candidate tree set (20)
Current best tree score: -9174.504 / CPU time: 29.894
Number of iterations: 20
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 30 / LogL: -9178.275 / Time: 0h:0m:56s (0h:2m:21s left)
Iteration 40 / LogL: -9185.914 / Time: 0h:1m:7s (0h:1m:48s left)
Iteration 50 / LogL: -9175.369 / Time: 0h:1m:18s (0h:1m:24s left)
Log-likelihood cutoff on original alignment: -9214.406
Iteration 60 / LogL: -9176.523 / Time: 0h:1m:28s (0h:1m:4s left)
Iteration 70 / LogL: -9174.661 / Time: 0h:1m:39s (0h:0m:47s left)
Iteration 80 / LogL: -9177.035 / Time: 0h:1m:51s (0h:0m:32s left)
BETTER TREE FOUND at iteration 86: -9174.501
Iteration 90 / LogL: -9269.079 / Time: 0h:2m:3s (0h:2m:12s left)
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 91: -9174.437
Iteration 100 / LogL: -9175.564 / Time: 0h:2m:14s (0h:2m:3s left)
Log-likelihood cutoff on original alignment: -9214.406
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.998
BETTER TREE FOUND at iteration 102: -9174.434
Iteration 110 / LogL: -9196.991 / Time: 0h:2m:25s (0h:2m:2s left)
Iteration 120 / LogL: -9287.806 / Time: 0h:2m:35s (0h:1m:47s left)
Iteration 130 / LogL: -9176.491 / Time: 0h:2m:47s (0h:1m:33s left)
BETTER TREE FOUND at iteration 135: -9174.432
Iteration 140 / LogL: -9175.166 / Time: 0h:2m:58s (0h:2m:2s left)
Iteration 150 / LogL: -9175.759 / Time: 0h:3m:9s (0h:1m:48s left)
Log-likelihood cutoff on original alignment: -9214.406
Iteration 160 / LogL: -9174.435 / Time: 0h:3m:21s (0h:1m:35s left)
Iteration 170 / LogL: -9176.185 / Time: 0h:3m:32s (0h:1m:21s left)
Iteration 180 / LogL: -9179.217 / Time: 0h:3m:42s (0h:1m:8s left)
BETTER TREE FOUND at iteration 190: -9174.431
Iteration 190 / LogL: -9174.431 / Time: 0h:3m:53s (0h:2m:3s left)
BETTER TREE FOUND at iteration 195: -9174.431
BETTER TREE FOUND at iteration 200: -9174.427
Iteration 200 / LogL: -9174.427 / Time: 0h:4m:4s (0h:2m:2s left)
Log-likelihood cutoff on original alignment: -9214.406
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.994
Iteration 210 / LogL: -9175.103 / Time: 0h:4m:15s (0h:1m:50s left)
Iteration 220 / LogL: -9174.433 / Time: 0h:4m:26s (0h:1m:37s left)
Iteration 230 / LogL: -9175.813 / Time: 0h:4m:37s (0h:1m:24s left)
Iteration 240 / LogL: -9174.432 / Time: 0h:4m:48s (0h:1m:12s left)
BETTER TREE FOUND at iteration 244: -9174.426
Iteration 250 / LogL: -9177.785 / Time: 0h:4m:59s (0h:1m:52s left)
Log-likelihood cutoff on original alignment: -9214.406
Iteration 260 / LogL: -9183.815 / Time: 0h:5m:9s (0h:1m:40s left)
Iteration 270 / LogL: -9179.174 / Time: 0h:5m:20s (0h:1m:28s left)
Iteration 280 / LogL: -9248.649 / Time: 0h:5m:30s (0h:1m:15s left)
Iteration 290 / LogL: -9175.552 / Time: 0h:5m:42s (0h:1m:3s left)
Iteration 300 / LogL: -9175.141 / Time: 0h:5m:53s (0h:0m:52s left)
Log-likelihood cutoff on original alignment: -9214.774
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.997
Iteration 310 / LogL: -9174.454 / Time: 0h:6m:5s (0h:1m:46s left)
Iteration 320 / LogL: -9181.256 / Time: 0h:6m:15s (0h:1m:34s left)
BETTER TREE FOUND at iteration 327: -9174.424
Iteration 330 / LogL: -9174.426 / Time: 0h:6m:26s (0h:1m:54s left)
Iteration 340 / LogL: -9175.137 / Time: 0h:6m:37s (0h:1m:42s left)
Iteration 350 / LogL: -9177.336 / Time: 0h:6m:49s (0h:1m:30s left)
Log-likelihood cutoff on original alignment: -9214.774
Iteration 360 / LogL: -9180.091 / Time: 0h:7m:1s (0h:1m:18s left)
Iteration 370 / LogL: -9177.195 / Time: 0h:7m:13s (0h:1m:6s left)
UPDATE BEST LOG-LIKELIHOOD: -9174.423
Iteration 380 / LogL: -9181.832 / Time: 0h:7m:23s (0h:0m:55s left)
BETTER TREE FOUND at iteration 388: -9174.423
Iteration 390 / LogL: -9175.133 / Time: 0h:7m:34s (0h:1m:54s left)
Iteration 400 / LogL: -9179.233 / Time: 0h:7m:45s (0h:1m:42s left)
Log-likelihood cutoff on original alignment: -9214.774
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.998
Iteration 410 / LogL: -9178.267 / Time: 0h:7m:57s (0h:1m:45s left)
Iteration 420 / LogL: -9179.320 / Time: 0h:8m:7s (0h:1m:33s left)
BETTER TREE FOUND at iteration 422: -9174.423
Iteration 430 / LogL: -9175.100 / Time: 0h:8m:18s (0h:1m:46s left)
Iteration 440 / LogL: -9175.164 / Time: 0h:8m:28s (0h:1m:35s left)
BETTER TREE FOUND at iteration 447: -9174.421
Iteration 450 / LogL: -9189.666 / Time: 0h:8m:40s (0h:1m:52s left)
Log-likelihood cutoff on original alignment: -9214.774
BETTER TREE FOUND at iteration 455: -9174.418
Iteration 460 / LogL: -9176.595 / Time: 0h:8m:52s (0h:1m:50s left)
Iteration 470 / LogL: -9175.129 / Time: 0h:9m:3s (0h:1m:38s left)
Iteration 480 / LogL: -9177.820 / Time: 0h:9m:14s (0h:1m:26s left)
Iteration 490 / LogL: -9176.213 / Time: 0h:9m:24s (0h:1m:15s left)
BETTER TREE FOUND at iteration 500: -9174.415
Iteration 500 / LogL: -9174.415 / Time: 0h:9m:36s (0h:1m:55s left)
Log-likelihood cutoff on original alignment: -9214.774
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.997
BETTER TREE FOUND at iteration 507: -9174.414
Iteration 510 / LogL: -9202.211 / Time: 0h:9m:48s (0h:1m:52s left)
Iteration 520 / LogL: -9180.085 / Time: 0h:9m:59s (0h:1m:40s left)
Iteration 530 / LogL: -9174.419 / Time: 0h:10m:10s (0h:1m:28s left)
Iteration 540 / LogL: -9174.420 / Time: 0h:10m:21s (0h:1m:17s left)
Iteration 550 / LogL: -9175.759 / Time: 0h:10m:33s (0h:1m:5s left)
Log-likelihood cutoff on original alignment: -9214.774
Iteration 560 / LogL: -9175.133 / Time: 0h:10m:45s (0h:0m:54s left)
Iteration 570 / LogL: -9179.153 / Time: 0h:10m:56s (0h:0m:42s left)
Iteration 580 / LogL: -9176.207 / Time: 0h:11m:7s (0h:0m:31s left)
BETTER TREE FOUND at iteration 585: -9174.414
Iteration 590 / LogL: -9174.418 / Time: 0h:11m:19s (0h:1m:49s left)
Iteration 600 / LogL: -9180.609 / Time: 0h:11m:29s (0h:1m:37s left)
Log-likelihood cutoff on original alignment: -9214.774
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.999
Iteration 610 / LogL: -9184.767 / Time: 0h:11m:40s (0h:1m:43s left)
Iteration 620 / LogL: -9181.585 / Time: 0h:11m:53s (0h:1m:32s left)
Iteration 630 / LogL: -9174.416 / Time: 0h:12m:4s (0h:1m:20s left)
Iteration 640 / LogL: -9197.820 / Time: 0h:12m:16s (0h:1m:9s left)
Iteration 650 / LogL: -9174.418 / Time: 0h:12m:27s (0h:0m:57s left)
Log-likelihood cutoff on original alignment: -9214.774
BETTER TREE FOUND at iteration 660: -9174.413
Iteration 660 / LogL: -9174.413 / Time: 0h:12m:39s (0h:1m:55s left)
BETTER TREE FOUND at iteration 666: -9174.412
Iteration 670 / LogL: -9179.914 / Time: 0h:12m:50s (0h:1m:50s left)
Iteration 680 / LogL: -9174.416 / Time: 0h:13m:2s (0h:1m:39s left)
Iteration 690 / LogL: -9179.855 / Time: 0h:13m:13s (0h:1m:27s left)
Iteration 700 / LogL: -9180.172 / Time: 0h:13m:24s (0h:1m:15s left)
Log-likelihood cutoff on original alignment: -9214.774
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.999
Iteration 710 / LogL: -9176.475 / Time: 0h:13m:35s (0h:1m:43s left)
Iteration 720 / LogL: -9179.229 / Time: 0h:13m:47s (0h:1m:32s left)
Iteration 730 / LogL: -9201.217 / Time: 0h:13m:58s (0h:1m:20s left)
Iteration 740 / LogL: -9175.536 / Time: 0h:14m:9s (0h:1m:9s left)
Iteration 750 / LogL: -9181.667 / Time: 0h:14m:21s (0h:0m:57s left)
Log-likelihood cutoff on original alignment: -9214.774
BETTER TREE FOUND at iteration 753: -9174.411
Iteration 760 / LogL: -9180.638 / Time: 0h:14m:33s (0h:1m:47s left)
Iteration 770 / LogL: -9176.585 / Time: 0h:14m:44s (0h:1m:35s left)
BETTER TREE FOUND at iteration 776: -9174.411
Iteration 780 / LogL: -9175.913 / Time: 0h:14m:56s (0h:1m:50s left)
Iteration 790 / LogL: -9175.535 / Time: 0h:15m:7s (0h:1m:38s left)
Iteration 800 / LogL: -9185.527 / Time: 0h:15m:19s (0h:1m:27s left)
Log-likelihood cutoff on original alignment: -9214.774
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.999
Iteration 810 / LogL: -9178.643 / Time: 0h:15m:31s (0h:1m:43s left)
Iteration 820 / LogL: -9183.311 / Time: 0h:15m:42s (0h:1m:32s left)
Iteration 830 / LogL: -9177.387 / Time: 0h:15m:54s (0h:1m:20s left)
Iteration 840 / LogL: -9178.215 / Time: 0h:16m:4s (0h:1m:8s left)
Iteration 850 / LogL: -9175.123 / Time: 0h:16m:16s (0h:0m:57s left)
Log-likelihood cutoff on original alignment: -9214.774
Iteration 860 / LogL: -9174.417 / Time: 0h:16m:27s (0h:0m:45s left)
Iteration 870 / LogL: -9175.299 / Time: 0h:16m:39s (0h:0m:34s left)
TREE SEARCH COMPLETED AFTER 877 ITERATIONS / Time: 0h:16m:47s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -9174.411
2. Current log-likelihood: -9174.370
3. Current log-likelihood: -9174.336
4. Current log-likelihood: -9174.304
5. Current log-likelihood: -9174.276
6. Current log-likelihood: -9174.250
7. Current log-likelihood: -9174.226
8. Current log-likelihood: -9174.204
9. Current log-likelihood: -9174.185
Optimal log-likelihood: -9174.177
Rate parameters:  A-C: 0.84524  A-G: 1.32398  A-T: 1.87983  C-G: 0.41187  C-T: 5.03020  G-T: 1.00000
Base frequencies:  A: 0.209  C: 0.267  G: 0.333  T: 0.190
Site proportion and rates:  (0.834,0.182) (0.005,0.611) (0.032,3.395) (0.098,3.409) (0.031,12.962)
Parameters optimization took 9 rounds (3.658 sec)
BEST SCORE FOUND : -9174.177

Testing tree branches by SH-like aLRT with 1000 replicates...
4.064 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file Pettalidae_28S_mafft_gblocks.fasta.splits.nex
Total tree length: 0.867

Total number of iterations: 877
CPU time used for tree search: 989.936 sec (0h:16m:29s)
Wall-clock time used for tree search: 992.922 sec (0h:16m:32s)
Total CPU time used: 1012.536 sec (0h:16m:52s)
Total wall-clock time used: 1015.815 sec (0h:16m:55s)

Computing bootstrap consensus tree...
Reading input file Pettalidae_28S_mafft_gblocks.fasta.splits.nex...
114 taxa and 1061 splits.
Consensus tree written to Pettalidae_28S_mafft_gblocks.fasta.contree
Reading input trees file Pettalidae_28S_mafft_gblocks.fasta.contree
Log-likelihood of consensus tree: -9174.948

Analysis results written to: 
  IQ-TREE report:                Pettalidae_28S_mafft_gblocks.fasta.iqtree
  Maximum-likelihood tree:       Pettalidae_28S_mafft_gblocks.fasta.treefile
  Likelihood distances:          Pettalidae_28S_mafft_gblocks.fasta.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          Pettalidae_28S_mafft_gblocks.fasta.splits.nex
  Consensus tree:                Pettalidae_28S_mafft_gblocks.fasta.contree
  Screen log file:               Pettalidae_28S_mafft_gblocks.fasta.log

Date and Time: Wed Jun 15 23:32:21 2022
